` Transcriptomics Publications
CMCR_logoclick for homepagee-mail

Project 2 Publication List:

Bertucci A, Smilenov LB, Turner HC, Amundson SA and Brenner DJ (2016) In vitro RABiT measurement of dose rate effects on radiation induction of micronuclei in human peripheral blood lymphocytes. Radiat Environ Biophys.

Ghandhi SA, Weber W, Melo D, Doyle-Eisele M, Chowdhury M, Guilmette R and Amundson SA (2015) Effect of 90Sr internal emitter on gene expression in mouse blood. BMC Genomics 16: 586. PMCID: PMC4528784. [full text]

Turner HC, Shuryak I, Taveras M, Bertucci A, Perrier JR, Chen C, Elliston CD, Johnson GW, Smilenov LB, Amundson SA and Brenner DJ (2015) Effect of Dose Rate on Residual gamma-H2AX Levels and Frequency of Micronuclei in X-Irradiated Mouse Lymphocytes. Radiat Res 183: 315-324. PMCID: PMC4545272. [ful text]

Ghandhi SA, Smilenov LB, Elliston CD, Chowdhury M and Amundson SA (2015) Radiation dose-rate effects on gene expression for human biodosimetry. BMC Med Genomics 8: 22. PMCID: PMC4472181. [full text]

Paul S, Smilenov LB, Elliston CD and Amundson SA (2015) Radiation Dose-Rate Effects on Gene Expression in a Mouse Biodosimetry Model. Radiat Res 184: 24-32. PMCID: PMC4526102. [abstract]

Turner HC, Shuryak I, Weber W, Doyle-Eisele M, Melo D, Guilmette R, Amundson SA and Brenner DJ (2015) γ-H2AX Kinetic Profile in Mouse Lymphocytes Exposed to the Internal Emitters Cesium-137 and Strontium-90. PLoS One 10: e0143815. PMC4664397. [full text]

Sun H, Olsen T, Zhu J, Tao JG, Ponnaiya B, Amundson SA, Brenner DJ, and Lin Q (2015) A bead-based microfluidic approach to integrated single-cell gene expression analysis by quantitative RT-PCR. RSC Advances 5: 4886-4893. PMC4394375[abstract] [full text]

Paul S, and Amundson SA (2014) Differential effect of active smoking on gene expression in male and female smokers. J Carcinog Mutagen 5: 198. PMC4303254. [full text]

Luo X, Suzuki M, Ghandhi SA, Amundson SA, and Boothman DA (2014) ATM Regulates Insulin-Like Growth Factor 1-Secretory Clusterin (IGF-1-sCLU) Expression that Protects Cells against Senescence. PLoS One 9: e99983. PMC4061041. [full text]

Laiakis EC, Mak TD, Anizan S, Amundson SA, Barker CA, Wolden SL, Brenner DJ, and Fornace AJ, Jr (2014) Development of a Metabolomic Radiation Signature in Urine from Patients Undergoing Total Body Irradiation. Radiat Res 181: 350-361. PMC4071158. [abstract] [full text]

Paul S, Ghandhi SA, Weber W, Doyle-Eisele M, Melo D, Guilmette R, and Amundson SA (2014) Gene expression response of mice after a single dose of 137CS as an internal emitter. Radiat Res 182: 380-389. PMC4212697. [abstract] [full text]

Brenner DJ, Vazquez M, Buonanno M, Amundson SA, Bigelow AW, Garty G, Harken AD, Hei TK, Marino SA, Ponnaiya B, Randers-Pehrson G, and Xu Y (2014) Integrated interdisciplinary training in the radiological sciences. Br J Radiol 87: 20130779. PMC4064543. [full text]

Ponnaiya B, Amundson SA, Ghandhi SA, Smilenov LB, Geard CR, Buonanno M, and Brenner DJ (2013) Single-cell responses to ionizing radiation. Radiat Environ Biophys 52: 523-530. PMC3812812. [full text]

Brengues M, Smith S, Estes M, Zenhausern F. Integrated micro-fluidic system for gene expression based biodosimetry. In: Christensen DM, Sugarman SL, Fm O, editors. The medical basis for radiation accident preparedness v: Advances in diagnosis & management of ionizing radiation injuries & illnesses. Oak Ridge Associated Universities; 2013. p363-6. [full text]

Paul S, Smilenov LB, and Amundson SA, Widespread decreased expression of immune function genes in human peripheral blood following radiation exposure. Radiat Res 2013, 180(6):575-83. PMC4068286 [abstract] [full text]

Badie C, Kabacik S, Balagurunathan Y, Bernard N, Brengues M, Faggioni G, Greither R, Lista F, Peinnequin A, Poyot T, Herodin F, Missel A, Terbrueggen B, Zenhausern F, Rothkamm K, Meineke V, Braselmann H, Beinke C, Abend M. Laboratory intercomparison of gene expression assays. Radiat Res 2013, 180(2): 138-148. PMC4117252 [abstract] [full text]

Rothkamm K, Beinke C, Romm H, Badie C, Balagurunathan Y, Barnard S, Bernard N, Boulay-Greene H, M. Brengues, A. De Amicis, S. De Sanctis, R. Greither, F. Herodin, A. Jones, S. Kabacik, T. Knie, U. Kulka, F. Lista, P. Martigne, A. Missel, J. Moquet, U. Oestreicher, A. Peinnequin, T. Poyot, U. Roessler, H. Scherthan, B. Terbrueggen, H. Thierens, M. Valente, A. Vral, F. Zenhausern, V. Meineke, H. Braselmanni and M. Abend, (2013) Comparison of Established and Emerging Biodosimetry Assays. Radiation Research, 180: 111-119. PMC409434 [abstract] [full text]

Templin, T, Young, EF, and Smilenov, LB. Proton radiation induced miRNA signatures in mouse blood: characterization and comparison with (56)Fe -ion and gamma radiation. Int J Radiat Biol 2012, 88(7):531-9., PMCID: PMC3590022. [abstract] [full text]

Paul S and Amundson SA. Gene expression signatures of radiation exposure in peripheral white blood cells of smokers and non-smokers.  Int J Radiat Biol., 2011, 87(8): 791-801. PMCID: PMC3580190. [abstract] [full text]

Templin T., Amundson SA, Brenner DJ, and Smilenov LB. Whole mouse blood microRNA as biomarkers for exposure to gamma-rays and (56)Fe ion. Int J Radiat Biol, 2011, 87:653-62. PMCID: PMC3586327. [abstract] [full text]

Williams, P D, Owens, C R, Dziegielewski, J, Moskaluk, C A, Read, P W, Larner, J M, Story, M D, Brock, W A, Amundson, S A, Lee, J K, and Theodorescu, D. Cyclophilin B expression is associated with in vitro radioresistance and clinical outcome after radiotherapy. Neoplasia 2011, 13: 1122-1131.  PMCID: PMC3257187. [abstract] [full text]

Amundson SA and Smilenov LB. Integration of biological knowledge and gene expression data for biomarker selection: FN1 as a potential predictor of radiation resistance in head and neck cancer.  Cancer Biol. Ther, 2011, 10(12): 1252-5.  PMCID: PMC3230290 [abstract] [full text]

Templin T, Paul S, Amundson SA, Young EF, Barker C, Wolden S, Smilenov LB.  Radiation-induced micro-RNA expression changes in peripheral blood cells of radiotherapy patients.  Int J Radiat Oncol Biol Phys, 2011, 80(2): 549-557. PMCID: PMC3589812 [abstract] [full text]

Ghandhi SA, Sinha A, Markatou M, Amundson SA. Time-series clustering of gene expression in irradiated and bystander fibroblasts: An application of FBPA clustering. BMC Genomics, 2011, 12:2.  PMCID: PMC3022823.  [abstract] [full text]

Paul S, Barker CA, Turner HC, McLane A, Wolden SL and Amundson SA. Prediction of in vivo radiation dose status in radiotherapy patients using ex vivo and in vivo gene expression signatures.  Radiat Res, 2011, 175(3):257-265. PMCID: PMC3134561. [abstract]

Huang TC, Paul S, Gong P, Levicky R, Kymissis J, Amundson SA, Shepard KL.  Gene expression analysis with an integrated CMOS microarray by time-resolved fluorescence detection. Biosens Bioelectron, 2011, 26(5):2660-5. PMCID: PMC3411189. [abstract] [full text]

Brengues M, Paap B, Bittner M, Amundson SA, Seligmann B, Lenigk R, Korn R and Zenhausern F.  Biodosimetry on small blood volume using gene expression assay.  Health Physics, 2010, 98(2): 179-85.  PMCID: PMC3677703. [abstract]

Garty G, Chen Y, Salerno A, Turner H, Zhang J, Lyulko O, Bertucci A, Xu Y, Wang H, Simaan N, Randers-Pehrson G, Yao YL, Amundson SA, and Brenner DJ.  The RABiT:  A Rapid Automated Biodosimetry Tool for Radiological Triage.  Health Physics, 2010, 98(2): 209-17. PMCID: PMC2923588. [abstract]

Paul, S and Amundson SA.  Development of gene expression signatures for practical radiation biodosimetry. Int J Radiat Oncol Biol Phys, 2008, 71: 1236-1244. PMCID: PMC2478639. [abstract] [full text]

Straume, T., Amundson, S.A., Blakely, W.F., Burns, F.J., Chen, A., Dainiak, N., Franklin, S., Leary, J.A., Loftus, D.J., Morgan, W.F., Pellmar, T.C., Stolc, V., Turteltaub, K.W., Vaughan, A.T., Vijayakumar, S. and Wyrobek, A.J. Meeting Report – NASA Radiation Biomarker Workshop. Radiat Res 2008, 170: 393-405. [full text]

Amundson, S.A., K.T. Do, L.C. Vinikoor, R.A. Lee, C.A. Koch-Paiz, J. Ahn, M. Reimers, Y. Chen, D.A. Scudiero, J.N. Weinstein, J.M. Trent, M.L. Bittner, P.S. Meltzer and A.J. Fornace, Jr. Integrating global gene expression and radiation survival parameters across the 60 cell lines of the national cancer institute anticancer drug screen. Cancer Res 2008, 68: 415-424. [abstract] [PDF] [supplemental data: SI figure 1, SI table 1, 2, 3 and 4] [microarray data]

Amundson SA.  Functional genomics and a new era in radiation biology and oncology. Bioscience, 2008, 58: 491-500. [full text]

Amundson, SA.  Functional genomics in radiation biology: a gateway to cellular systems-level studies. Radiat Environ Biophys, 2008, 47: 25-31. [full text]

Alexander G, Swartz H, Amundson SA, Blakely WF, Buddemeier B, Gallez B, Dainiak N, Goans R, Hayes R, Jones R, Lowry P, Noska M, Okunieff P, Salner A, Schauer D, Trompier F, Turteltaub K, Voisin P, Wiley AJ, Wilkins R.  BiodosEPR-2006 Meeting: Acute Dosimetry Consensus Committee Recommendations on Biodosimetry Applications in Events Involving Terrorist Uses of Radioactive Materials and Radiation Accidents. Radiat Meas, 2007, 42:972-996. [full text]




Columbia University




tel: (212) 305-5660
fax: (212) 305-3220
Center for High-Throughput Minimally-Invasive Radiation Biodosimetry