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Chromosome banding

A second new assay under development is multicolor chromosome banding (mBAND), using Fluorescence In Situ Hybridization (FISH). This is an established technique that yields a visual interpretation of sequence along a chromosome. By selectively painting regions along a specific chromosome (chromosome 5 in our implementation) with a combination of one or more paints. This assay is particularly sensitive to high LET radiations such as those from alpha emitters and neutron irradiations and hence is useful for assaying the upcoming neutron and 239Pu irradiations.

While sample-preparation protocol and imaging systems exist for the mBAND assay, we aim to automate the entire mBAND assay process from sample preparation to sample scoring, within the RABiT system. Our goal is to produce a high-throughput, automated mBAND assay to characterize chromosomal rearrangement as a function of radiation quality and/or quantity.

A computer-controlled imaging system has been built in-house to acquire multi-colored images of mBAND samples. The system has proven successful for acquiring, in sequence, the six images associated with the colors in an mBAND sample: DEAC, FITC, Spectrum Orange, Texas Red, Cy5, and DAPI counter stain. Following acquisition, images from mBAND samples are delivered to an image-analysis program written in Matlab. This algorithm

• 1) reads the gray-scale image (probe profile) for each fluorophore

• 2) applies digital conditioning

• 3) applies intensity thresholds to binarize each fluorophore signal.

Regions manifesting particular color combinations are portrayed in pseudo color and give rise to the 11 basic bands for chromosome 5.

Ongoing tests at the RARAF neutron facility have demonstrated that our imaging system and analysis algorithms are suitable for detecting translocations following neutron irradiation. These translocations are not seen with photon irradiations establishing the RABiT-BAND assay as a useful tool for quantifying the neutron component of the exposure.

Links

CRR

RARAF

Columbia University

Georgetown

NIAID

 



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Center for High-Throughput Minimally-Invasive Radiation Biodosimetry